PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 394aa    MW: 43088.6 Da    PI: 8.6485
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-114671126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C yG +C+F+H+
  XP_011085490.1 46 PGEPDCIYYLRTGSCGYGTSCRFNHP 71
                    5789*********************8 PP

2zf-CCCH37.15.5e-1296120327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C ++++tGtCkyG++Ck++H++
  XP_011085490.1  96 QPDCGYYLKTGTCKYGSTCKYHHPK 120
                     789********************96 PP

3zf-CCCH33.66.6e-11139163327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     t+ C++++rtG CkyG  CkF+H++
  XP_011085490.1 139 TRSCPYYMRTGLCKYGYACKFHHPQ 163
                     899********************97 PP

4zf-CCCH34.82.8e-11245270227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+  G CkyG  Ck++H++
  XP_011085490.1 245 DQPECRYFMIHGSCKYGLDCKYHHPK 270
                     689*********************96 PP

5zf-CCCH35.61.6e-11290315126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++ +G CkyG++CkF H+
  XP_011085490.1 290 PGQPICSYYSLYGLCKYGPTCKFDHP 315
                     5789*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8454573IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-54572IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-94771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-55170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6893121IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-593120IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-996120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-698121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-499120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7134164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249136164IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5136163IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5139162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497243271IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5243270IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-9245270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6246273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4249271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699289317IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7289316IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8291315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4294314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MPGNRKLQRN GSVPDKVEEV MRRLKVEESD DNGRVGDDPG AYPDRPGEPD CIYYLRTGSC  60
GYGTSCRFNH PSNAGQVNTI VYGVKNTSEL PERAGQPDCG YYLKTGTCKY GSTCKYHHPK  120
DRQADVLMNL VGLPMRQNTR SCPYYMRTGL CKYGYACKFH HPQPATTTNV LPVIGPVYGS  180
GGSTGAPSPG APSIGDPSTT PLSKATYFSN SLLQLPQNYI PLFLSPSQGW NTYMLSASYL  240
PERPDQPECR YFMIHGSCKY GLDCKYHHPK EKISQVASSS LGPLGLPLRP GQPICSYYSL  300
YGLCKYGPTC KFDHPLDGYS YAYSLAVPPL AAAYSSTTPY QRATPLVPLS ETSLAKPSRV  360
SDCIKKGETT GNKNQQPKTK NVGDSPNPSD SLPH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085490.10.0PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X3
TrEMBLA0A022RSU51e-174A0A022RSU5_ERYGU; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-145(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-84C3H family protein